IL_6XYW_095

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_095 not in the Motif Atlas

Geometric match to IL_4WF9_090

Geometric discrepancy: 0.1958

The information below is about IL_4WF9_090

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6XYW|1|1|G|2752
6XYW|1|1|G|2753
*
6XYW|1|1|C|2794
6XYW|1|1|A|2795
6XYW|1|1|C|2796

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AL

Uncharacterized protein At1g27435/F17L21.30

Chain Ac

50S ribosomal protein L3-2, mitochondrial

Chain Am

60S ribosomal protein L16, mitochondrial