IL_6XYW_096

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_096 not in the Motif Atlas

Homologous match to IL_4WF9_091

Geometric discrepancy: 0.1615

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6XYW|1|1|U|2755
6XYW|1|1|G|2756
6XYW|1|1|A|2757
*
6XYW|1|1|U|2791
6XYW|1|1|G|2792

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AL

Uncharacterized protein At1g27435/F17L21.30

Chain Am

60S ribosomal protein L16, mitochondrial