IL_6XYW_097

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AUG*CGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_097 not in the Motif Atlas

Geometric match to IL_7A0S_086

Geometric discrepancy: 0.2437

The information below is about IL_7A0S_086

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6XYW|1|1|A|2757
6XYW|1|1|U|2758
6XYW|1|1|G|2759
*
6XYW|1|1|C|2787
6XYW|1|1|G|2788
6XYW|1|1|U|2789
6XYW|1|1|U|2790
6XYW|1|1|U|2791

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Am

60S ribosomal protein L16, mitochondrial