IL_6XYW_098

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_098 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1702

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6XYW|1|1|C|2764
6XYW|1|1|C|2765
6XYW|1|1|A|2766
6XYW|1|1|A|2767
6XYW|1|1|G|2768
*
6XYW|1|1|C|2778
6XYW|1|1|G|2779
6XYW|1|1|A|2780
6XYW|1|1|C|2781
6XYW|1|1|G|2782

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AE

Ribosomal protein

Chain Am

60S ribosomal protein L16, mitochondrial