IL_6XYW_100

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6XYW|1|1|G|2874, 6XYW|1|1|A|2875

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_100 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1555

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6XYW|1|1|C|2808
6XYW|1|1|U|2809
6XYW|1|1|C|2810
*
6XYW|1|1|G|2872
6XYW|1|1|U|2873
6XYW|1|1|G|2874
6XYW|1|1|A|2875
6XYW|1|1|G|2876

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ac

50S ribosomal protein L3-2, mitochondrial