IL_6XYW_103

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6XYW|1|1|A|2900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_103 not in the Motif Atlas

Geometric match to IL_5TBW_113

Geometric discrepancy: 0.2033

The information below is about IL_5TBW_113

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6XYW|1|1|C|2889
6XYW|1|1|G|2890
*
6XYW|1|1|C|2899
6XYW|1|1|A|2900
6XYW|1|1|G|2901

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ab

Expressed protein