IL_6XYW_109
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- AAGAAC*GGAAAU
- Length
- 12 nucleotides
- Bulged bases
- 6XYW|1|1|A|3060
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_109 not in the Motif Atlas
- Homologous match to IL_7RQB_107
- Geometric discrepancy: 0.3089
- The information below is about IL_7RQB_107
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.5
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6XYW|1|1|A|3039
6XYW|1|1|A|3040
6XYW|1|1|G|3041
6XYW|1|1|A|3042
6XYW|1|1|A|3043
6XYW|1|1|C|3044
*
6XYW|1|1|G|3057
6XYW|1|1|G|3058
6XYW|1|1|A|3059
6XYW|1|1|A|3060
6XYW|1|1|A|3061
6XYW|1|1|U|3062
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AE
- Ribosomal protein
- Chain Af
- Putative ribosomal protein L6
- Chain Aj
- At1g01640
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