IL_6XYW_110

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_110 not in the Motif Atlas

Homologous match to IL_4WF9_106

Geometric discrepancy: 0.2147

The information below is about IL_4WF9_106

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

6XYW|1|1|G|3112
6XYW|1|1|G|3113
*
6XYW|1|1|U|3152
6XYW|1|1|A|3153
6XYW|1|1|C|3154

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain An

At5g09770

Chain Ap

At1g24240/F3I6_17