IL_6XYW_111

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAG*CAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_111 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3398

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6XYW|1|1|G|3117
6XYW|1|1|A|3118
6XYW|1|1|G|3119
*
6XYW|1|1|C|3145
6XYW|1|1|A|3146
6XYW|1|1|U|3147
6XYW|1|1|C|3148

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain An

At5g09770

Chain Ap

At1g24240/F3I6_17