IL_6XYW_115

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

6XYW|1|2|A|415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_115 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.3049

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6XYW|1|2|A|52
6XYW|1|2|U|53
*
6XYW|1|2|A|414
6XYW|1|2|A|415
6XYW|1|2|U|416

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial