IL_6XYW_116

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUUAAC*GGG

Length

9 nucleotides

Bulged bases

6XYW|1|2|U|56, 6XYW|1|2|A|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_116 not in the Motif Atlas

Geometric match to IL_5J7L_003

Geometric discrepancy: 0.1989

The information below is about IL_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14177.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6XYW|1|2|C|55
6XYW|1|2|U|56
6XYW|1|2|U|57
6XYW|1|2|A|58
6XYW|1|2|A|59
6XYW|1|2|C|60
*
6XYW|1|2|G|378
6XYW|1|2|G|379
6XYW|1|2|G|380

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bk

Ribosomal protein S12, mitochondrial