IL_6XYW_124

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_124 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.1567

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.2

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

6XYW|1|2|C|196
6XYW|1|2|U|197
6XYW|1|2|G|198
6XYW|1|2|C|199
6XYW|1|2|C|200
*
6XYW|1|2|G|246
6XYW|1|2|A|247
6XYW|1|2|U|248
6XYW|1|2|G|249

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial

Chain Bv

AT5g49210/K21P3_8