IL_6XYW_131

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGAAGAAA*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_131 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1718

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6XYW|1|2|U|427
6XYW|1|2|G|428
6XYW|1|2|A|429
6XYW|1|2|A|430
6XYW|1|2|G|431
6XYW|1|2|A|432
6XYW|1|2|A|433
6XYW|1|2|A|434
*
6XYW|1|2|U|447
6XYW|1|2|G|448
6XYW|1|2|U|449
6XYW|1|2|A|450
6XYW|1|2|A|451
6XYW|1|2|A|452
6XYW|1|2|G|453

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BL

UNK-1

Chain Bc

Ribosomal protein S4, mitochondrial