IL_6XYW_133

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_133 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.173

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6XYW|1|2|C|501
6XYW|1|2|G|502
6XYW|1|2|G|503
6XYW|1|2|C|504
6XYW|1|2|U|505
6XYW|1|2|A|506
6XYW|1|2|A|507
6XYW|1|2|C|508
*
6XYW|1|2|G|537
6XYW|1|2|G|538

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bc

Ribosomal protein S4, mitochondrial

Chain Bd

At1g64880

Chain Bk

Ribosomal protein S12, mitochondrial