IL_6XYW_135

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6XYW|1|2|A|569

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_135 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1916

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6XYW|1|2|C|566
6XYW|1|2|G|567
6XYW|1|2|U|568
6XYW|1|2|A|569
6XYW|1|2|A|570
6XYW|1|2|A|571
6XYW|1|2|G|572
*
6XYW|1|2|C|873
6XYW|1|2|G|874

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BB

mS38

Chain Bd

At1g64880

Chain Bk

Ribosomal protein S12, mitochondrial