IL_6XYW_140

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAG*CCGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_140 not in the Motif Atlas

Geometric match to IL_7SZU_003

Geometric discrepancy: 0.3689

The information below is about IL_7SZU_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6XYW|1|2|G|649
6XYW|1|2|A|650
6XYW|1|2|G|651
*
6XYW|1|2|C|745
6XYW|1|2|C|746
6XYW|1|2|G|747
6XYW|1|2|A|748
6XYW|1|2|C|749

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bg

40S ribosomal protein S15a-5

Chain Bn

At1g15810/F7H2_23

Chain Bv

AT5g49210/K21P3_8