IL_6XYW_146

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_146 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.1619

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6XYW|1|2|C|776
6XYW|1|2|G|777
6XYW|1|2|A|778
6XYW|1|2|A|779
6XYW|1|2|C|780
*
6XYW|1|2|G|796
6XYW|1|2|G|797
6XYW|1|2|U|798
6XYW|1|2|A|799
6XYW|1|2|G|800

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Bj

Probable ribosomal protein S11, mitochondrial

Chain Bs

Ribosomal protein S21 family protein