IL_6XYW_157

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_157 not in the Motif Atlas

Geometric match to IL_4LFB_047

Geometric discrepancy: 0.1497

The information below is about IL_4LFB_047

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6XYW|1|2|G|1053
6XYW|1|2|U|1054
6XYW|1|2|C|1055
*
6XYW|1|2|G|1543
6XYW|1|2|U|1544
6XYW|1|2|C|1545

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bb

Ribosomal protein S3, mitochondrial

Chain Bd

At1g64880

Chain Bi

40S ribosomal protein S10, mitochondrial

Chain Bm

At2g34520