IL_6XYW_160

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_160 not in the Motif Atlas

Geometric match to IL_4WF9_047

Geometric discrepancy: 0.3981

The information below is about IL_4WF9_047

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6XYW|1|2|G|1124
6XYW|1|2|A|1125
6XYW|1|2|C|1126
*
6XYW|1|2|G|1491
6XYW|1|2|C|1492

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bh

30S ribosomal protein S9, mitochondrial

Chain Bi

40S ribosomal protein S10, mitochondrial

Chain Bz

AT3G18240 protein