IL_6XYW_167

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

6XYW|1|2|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_167 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.3278

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6XYW|1|2|C|1508
6XYW|1|2|U|1509
6XYW|1|2|G|1510
6XYW|1|2|C|1511
*
6XYW|1|2|G|1525
6XYW|1|2|A|1526
6XYW|1|2|G|1527
6XYW|1|2|G|1528
6XYW|1|2|A|1529
6XYW|1|2|A|1530
6XYW|1|2|G|1531

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bh

30S ribosomal protein S9, mitochondrial