IL_6XYW_170
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CAAGG*CGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XYW_170 not in the Motif Atlas
- Homologous match to IL_5J7L_056
- Geometric discrepancy: 0.3961
- The information below is about IL_5J7L_056
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
6XYW|1|2|C|1609
6XYW|1|2|A|1610
6XYW|1|2|A|1611
6XYW|1|2|G|1612
6XYW|1|2|G|1613
*
6XYW|1|2|C|1622
6XYW|1|2|G|1623
6XYW|1|2|G|1624
6XYW|1|2|A|1625
6XYW|1|2|G|1626
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain BF
- mS31/mS46
- Chain Bm
- At2g34520
- Chain Br
- 40S ribosomal protein S19, mitochondrial
- Chain Bt
- 30S ribosomal protein S31, mitochondrial
- Chain Bx
- 37S ribosomal protein S27
- Chain Bz
- AT3G18240 protein
Coloring options: