IL_6XYW_187

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_187 not in the Motif Atlas

Geometric match to IL_7A0S_054

Geometric discrepancy: 0.3003

The information below is about IL_7A0S_054

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6XYW|1|1|C|128
6XYW|1|1|A|129
6XYW|1|1|A|130
*
6XYW|1|1|U|155
6XYW|1|1|G|156

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AQ

Pentatricopeptide repeat-containing protein PNM1, mitochondrial

Chain At

At4g39880

Chain Ay

At1g07830/F24B9_7