IL_6XYW_190

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAAG*UAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_190 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.2853

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6XYW|1|1|G|678
6XYW|1|1|A|679
6XYW|1|1|A|680
6XYW|1|1|G|681
*
6XYW|1|1|U|704
6XYW|1|1|A|705
6XYW|1|1|A|706
6XYW|1|1|C|707

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AH

Mitochondrial ribosomal protein L51/S25/CI-B8 family protein

Chain Aj

At1g01640

Chain Aq

50S ribosomal protein L20