IL_6XYW_195

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAG*CUCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_195 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2924

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6XYW|1|1|G|1006
6XYW|1|1|A|1007
6XYW|1|1|G|1008
*
6XYW|1|1|C|1059
6XYW|1|1|U|1060
6XYW|1|1|C|1061
6XYW|1|1|C|1062

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain 3

RNA (118-MER)

Chain Am

60S ribosomal protein L16, mitochondrial

Chain Aw

50S ribosomal protein L27