3D structure

PDB id
6XYW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the plant mitochondrial ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.86 Å

Loop

Sequence
GCACUCAAU*AGGGAAAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6XYW|1|1|G|1008
6XYW|1|1|C|1009
6XYW|1|1|A|1010
6XYW|1|1|C|1011
6XYW|1|1|U|1012
6XYW|1|1|C|1013
6XYW|1|1|A|1014
6XYW|1|1|A|1015
6XYW|1|1|U|1016
*
6XYW|1|1|A|1052
6XYW|1|1|G|1053
6XYW|1|1|G|1054
6XYW|1|1|G|1055
6XYW|1|1|A|1056
6XYW|1|1|A|1057
6XYW|1|1|A|1058
6XYW|1|1|C|1059

Current chains

Chain 1
RNA (2842-MER)

Nearby chains

Chain 3
RNA (118-MER)
Chain Am
60S ribosomal protein L16, mitochondrial
Chain Av
Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein

Coloring options:

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