IL_6XYW_210

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAAUGUGUAGGAUAGGUG*CACUCUUUC

Length

27 nucleotides

Bulged bases

6XYW|1|1|U|2422, 6XYW|1|1|G|2423, 6XYW|1|1|U|2424, 6XYW|1|1|A|2425, 6XYW|1|1|G|2427, 6XYW|1|1|U|2429, 6XYW|1|1|A|2430

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XYW|1|1|G|2417
6XYW|1|1|A|2418
6XYW|1|1|A|2419
6XYW|1|1|U|2420
6XYW|1|1|G|2421
6XYW|1|1|U|2422
6XYW|1|1|G|2423
6XYW|1|1|U|2424
6XYW|1|1|A|2425
6XYW|1|1|G|2426
6XYW|1|1|G|2427
6XYW|1|1|A|2428
6XYW|1|1|U|2429
6XYW|1|1|A|2430
6XYW|1|1|G|2431
6XYW|1|1|G|2432
6XYW|1|1|U|2433
6XYW|1|1|G|2434
*
6XYW|1|1|C|2471
6XYW|1|1|A|2472
6XYW|1|1|C|2473
6XYW|1|1|U|2474
6XYW|1|1|C|2475
6XYW|1|1|U|2476
6XYW|1|1|U|2477
6XYW|1|1|U|2478
6XYW|1|1|C|2479

Current chains

Chain 1

RNA (2842-MER)

Nearby chains