IL_6XYW_220

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6XYW|1|2|A|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_220 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3194

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6XYW|1|2|G|915
6XYW|1|2|A|916
6XYW|1|2|C|917
*
6XYW|1|2|G|1741
6XYW|1|2|U|1742
6XYW|1|2|A|1743
6XYW|1|2|C|1744

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BB

mS38

Chain Bd

At1g64880