IL_6XYW_228

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCGAAGCAUCGG*CAUACCACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XYW|1|2|C|1779
6XYW|1|2|C|1780
6XYW|1|2|G|1781
6XYW|1|2|A|1782
6XYW|1|2|A|1783
6XYW|1|2|G|1784
6XYW|1|2|C|1785
6XYW|1|2|A|1786
6XYW|1|2|U|1787
6XYW|1|2|C|1788
6XYW|1|2|G|1789
6XYW|1|2|G|1790
*
6XYW|1|2|C|1858
6XYW|1|2|A|1859
6XYW|1|2|U|1860
6XYW|1|2|A|1861
6XYW|1|2|C|1862
6XYW|1|2|C|1863
6XYW|1|2|A|1864
6XYW|1|2|C|1865
6XYW|1|2|G|1866

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AM

At1g73940/F2P9_19

Chain Ak

50S ribosomal protein HLP, mitochondrial

Chain Ap

At1g24240/F3I6_17