IL_6XYW_232

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

6XYW|1|2|G|406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_232 not in the Motif Atlas

Geometric match to IL_7KGA_003

Geometric discrepancy: 0.3665

The information below is about IL_7KGA_003

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

6XYW|1|2|U|394
6XYW|1|2|G|395
6XYW|1|2|G|396
*
6XYW|1|2|C|405
6XYW|1|2|G|406
6XYW|1|2|A|407

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BC

At5g26800

Chain Bo

30S ribosomal protein S16-2, chloroplastic/mitochondrial