IL_6XYW_233

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GU*AAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XYW_233 not in the Motif Atlas

Homologous match to IL_5J7L_029

Geometric discrepancy: 0.1804

The information below is about IL_5J7L_029

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

6XYW|1|2|G|594
6XYW|1|2|U|595
*
6XYW|1|2|A|635
6XYW|1|2|A|636
6XYW|1|2|A|637
6XYW|1|2|C|638

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bg

40S ribosomal protein S15a-5

Chain Bp

Nucleic acid-binding, OB-fold-like protein

Chain Bv

AT5g49210/K21P3_8