3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
6XZ7|1|A|A|1127, 6XZ7|1|A|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZ7_035 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0649
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6XZ7|1|A|G|1024
6XZ7|1|A|G|1025
6XZ7|1|A|G|1026
6XZ7|1|A|A|1027
6XZ7|1|A|A|1028
6XZ7|1|A|A|1029
6XZ7|1|A|C|1030
*
6XZ7|1|A|G|1124
6XZ7|1|A|G|1125
6XZ7|1|A|A|1126
6XZ7|1|A|A|1127
6XZ7|1|A|G|1128
6XZ7|1|A|A|1129
6XZ7|1|A|U|1130
6XZ7|1|A|G|1131
6XZ7|1|A|U|1132
6XZ7|1|A|A|1133
6XZ7|1|A|A|1134
6XZ7|1|A|C|1135
6XZ7|1|A|G|1136
6XZ7|1|A|G|1137
6XZ7|1|A|G|1138
6XZ7|1|A|G|1139
6XZ7|1|A|C|1140

Current chains

Chain A
23S rRNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain M
50S ribosomal protein L16
Chain e
50S ribosomal protein L36

Coloring options:


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