3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGAGG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZ7_048 not in the Motif Atlas
Homologous match to IL_5J7L_293
Geometric discrepancy: 0.0604
The information below is about IL_5J7L_293
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6XZ7|1|A|C|1357
6XZ7|1|A|G|1358
6XZ7|1|A|A|1359
6XZ7|1|A|G|1360
6XZ7|1|A|G|1361
*
6XZ7|1|A|C|1370
6XZ7|1|A|G|1371
6XZ7|1|A|U|1372
6XZ7|1|A|A|1373
6XZ7|1|A|G|1374

Current chains

Chain A
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2
Chain c
50S ribosomal protein L34

Coloring options:


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