3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
6XZ7|1|A|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZ7_063 not in the Motif Atlas
Homologous match to IL_5J7L_308
Geometric discrepancy: 0.0492
The information below is about IL_5J7L_308
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_47346.2
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

6XZ7|1|A|C|1686
6XZ7|1|A|G|1687
6XZ7|1|A|U|1688
6XZ7|1|A|A|1689
6XZ7|1|A|A|1690
6XZ7|1|A|C|1691
*
6XZ7|1|A|G|1696
6XZ7|1|A|G|1697
6XZ7|1|A|A|1698
6XZ7|1|A|G|1699
6XZ7|1|A|A|1700
6XZ7|1|A|A|1701
6XZ7|1|A|G|1702

Current chains

Chain A
23S rRNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


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