IL_6XZ7_083

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAUGUGUAGGAUAGGUG*CACCCUUU

Length

25 nucleotides

Bulged bases

6XZ7|1|A|U|2111, 6XZ7|1|A|U|2118, 6XZ7|1|A|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZ7_083 not in the Motif Atlas

Geometric match to IL_5J7L_328

Geometric discrepancy: 0.1045

The information below is about IL_5J7L_328

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20245.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

6XZ7|1|A|G|2107
6XZ7|1|A|A|2108
6XZ7|1|A|U|2109
6XZ7|1|A|G|2110
6XZ7|1|A|U|2111
6XZ7|1|A|G|2112
6XZ7|1|A|U|2113
6XZ7|1|A|A|2114
6XZ7|1|A|G|2115
6XZ7|1|A|G|2116
6XZ7|1|A|A|2117
6XZ7|1|A|U|2118
6XZ7|1|A|A|2119
6XZ7|1|A|G|2120
6XZ7|1|A|G|2121
6XZ7|1|A|U|2122
6XZ7|1|A|G|2123
*
6XZ7|1|A|C|2175
6XZ7|1|A|A|2176
6XZ7|1|A|C|2177
6XZ7|1|A|C|2178
6XZ7|1|A|C|2179
6XZ7|1|A|U|2180
6XZ7|1|A|U|2181
6XZ7|1|A|U|2182

Current chains

Chain A

23S rRNA

Nearby chains