IL_6XZ7_085

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6XZ7|1|A|U|2131, 6XZ7|1|A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZ7_085 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.1133

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6XZ7|1|A|C|2129
6XZ7|1|A|U|2130
6XZ7|1|A|U|2131
6XZ7|1|A|U|2132
6XZ7|1|A|G|2133
6XZ7|1|A|A|2134
6XZ7|1|A|A|2135
6XZ7|1|A|G|2136
*
6XZ7|1|A|U|2155
6XZ7|1|A|G|2156
6XZ7|1|A|G|2157
6XZ7|1|A|A|2158
6XZ7|1|A|G|2159

Current chains

Chain A

23S rRNA

Nearby chains