IL_6XZ7_093

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZ7_093 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.0784

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6XZ7|1|A|C|2466
6XZ7|1|A|C|2467
6XZ7|1|A|A|2468
6XZ7|1|A|A|2469
6XZ7|1|A|G|2470
*
6XZ7|1|A|C|2480
6XZ7|1|A|G|2481
6XZ7|1|A|A|2482
6XZ7|1|A|C|2483
6XZ7|1|A|G|2484

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain e

50S ribosomal protein L36

Chain g

Transfer RNA; tRNA