IL_6XZ7_116

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

6XZ7|1|A|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZ7_116 not in the Motif Atlas

Homologous match to IL_5J7L_385

Geometric discrepancy: 0.1712

The information below is about IL_5J7L_385

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6XZ7|1|A|G|1087
6XZ7|1|A|A|1088
6XZ7|1|A|A|1089
6XZ7|1|A|A|1090
*
6XZ7|1|A|U|1101
6XZ7|1|A|C|1102

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L11

Chain e

50S ribosomal protein L36