IL_6XZB_022

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

6XZB|1|A1|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_022 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0686

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6XZB|1|A1|G|446
6XZB|1|A1|G|447
6XZB|1|A1|A|448
6XZB|1|A1|G|449
6XZB|1|A1|G|450
*
6XZB|1|A1|C|483
6XZB|1|A1|G|484
6XZB|1|A1|U|485
6XZB|1|A1|U|486
6XZB|1|A1|A|487
6XZB|1|A1|C|488

Current chains

Chain A1

16S rRNA

Nearby chains

Chain D1

30S ribosomal protein S4

Chain P1

30S ribosomal protein S16