IL_6XZB_025
3D structure
- PDB id
- 6XZB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.54 Å
Loop
- Sequence
- GGCCAG*CGGUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6XZB|1|A1|A|532, 6XZB|1|A1|U|534
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6XZB_025 not in the Motif Atlas
- Homologous match to IL_5J7L_025
- Geometric discrepancy: 0.1468
- The information below is about IL_5J7L_025
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XZB|1|A1|G|515
6XZB|1|A1|G|517
6XZB|1|A1|C|518
6XZB|1|A1|C|519
6XZB|1|A1|A|520
6XZB|1|A1|G|521
*
6XZB|1|A1|C|528
6XZB|1|A1|G|529
6XZB|1|A1|G|530
6XZB|1|A1|U|531
6XZB|1|A1|A|532
6XZB|1|A1|A|533
6XZB|1|A1|U|534
6XZB|1|A1|A|535
6XZB|1|A1|C|536
Current chains
- Chain A1
- 16S rRNA
Nearby chains
- Chain C1
- 30S ribosomal protein S3
- Chain D1
- 30S ribosomal protein S4
- Chain L1
- 30S ribosomal protein S12
- Chain g2
- Transfer RNA; tRNA
Coloring options: