IL_6XZB_053

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_053 not in the Motif Atlas

Geometric match to IL_5J7L_053

Geometric discrepancy: 0.1117

The information below is about IL_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42032.1

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6XZB|1|A1|C|1158
6XZB|1|A1|U|1159
6XZB|1|A1|G|1160
6XZB|1|A1|C|1161
*
6XZB|1|A1|G|1175
6XZB|1|A1|A|1176
6XZB|1|A1|G|1177
6XZB|1|A1|G|1178
6XZB|1|A1|A|1179
6XZB|1|A1|A|1180
6XZB|1|A1|G|1181

Current chains

Chain A1

16S rRNA

Nearby chains

Chain B1

30S ribosomal protein S2

Chain I1

30S ribosomal protein S9