IL_6XZB_060

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUAC*GAAGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_060 not in the Motif Atlas

Homologous match to IL_4LFB_058

Geometric discrepancy: 0.3554

The information below is about IL_4LFB_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XZB|1|A1|G|1405
6XZB|1|A1|U|1406
6XZB|1|A1|A|1408
6XZB|1|A1|C|1409
*
6XZB|1|A1|G|1491
6XZB|1|A1|A|1492
6XZB|1|A1|A|1493
6XZB|1|A1|G|1494
6XZB|1|A1|U|1495
6XZB|1|A1|C|1496

Current chains

Chain A1

16S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain L1

30S ribosomal protein S12

Chain g2

Transfer RNA; tRNA