IL_6XZB_066

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_066 not in the Motif Atlas

Homologous match to IL_5J7L_245

Geometric discrepancy: 0.0423

The information below is about IL_5J7L_245

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6XZB|1|A2|G|24
6XZB|1|A2|U|25
6XZB|1|A2|G|26
6XZB|1|A2|G|27
6XZB|1|A2|A|28
6XZB|1|A2|U|29
6XZB|1|A2|G|30
*
6XZB|1|A2|C|510
6XZB|1|A2|U|511
6XZB|1|A2|G|512
6XZB|1|A2|A|513
6XZB|1|A2|A|514
6XZB|1|A2|A|515
6XZB|1|A2|C|516

Current chains

Chain A2

23S rRNA

Nearby chains

Chain Q2

50S ribosomal protein L20

Chain S2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32