IL_6XZB_074

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_074 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2428

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6XZB|1|A2|C|274
6XZB|1|A2|C|275
6XZB|1|A2|U|276
6XZB|1|A2|G|277
6XZB|1|A2|A|278
6XZB|1|A2|A|279
6XZB|1|A2|U|280
6XZB|1|A2|C|281
*
6XZB|1|A2|G|359
6XZB|1|A2|U|360
6XZB|1|A2|G|361
6XZB|1|A2|A|362
6XZB|1|A2|G|363

Current chains

Chain A2

23S rRNA

Nearby chains