IL_6XZB_076

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6XZB|1|A2|A|504, 6XZB|1|A2|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_076 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0558

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6XZB|1|A2|G|481
6XZB|1|A2|A|482
6XZB|1|A2|A|483
6XZB|1|A2|C|484
*
6XZB|1|A2|G|496
6XZB|1|A2|A|497
6XZB|1|A2|G|498
6XZB|1|A2|U|499
6XZB|1|A2|G|500
6XZB|1|A2|A|501
6XZB|1|A2|A|502
6XZB|1|A2|A|503
6XZB|1|A2|A|504
6XZB|1|A2|A|505
6XZB|1|A2|G|506
6XZB|1|A2|A|507
6XZB|1|A2|A|508
6XZB|1|A2|C|509

Current chains

Chain A2

23S rRNA

Nearby chains

Chain S2

50S ribosomal protein L22

Chain U2

50S ribosomal protein L24