IL_6XZB_077

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_077 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.0532

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6XZB|1|A2|G|536
6XZB|1|A2|G|537
6XZB|1|A2|A|538
6XZB|1|A2|G|539
*
6XZB|1|A2|U|554
6XZB|1|A2|G|555
6XZB|1|A2|A|556
6XZB|1|A2|C|557

Current chains

Chain A2

23S rRNA

Nearby chains

Chain J2

50S ribosomal protein L13

Chain Q2

50S ribosomal protein L20