3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GAUG*CGC
Length
7 nucleotides
Bulged bases
6XZB|1|A2|U|1033
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZB_101 not in the Motif Atlas
Homologous match to IL_7RQB_041
Geometric discrepancy: 0.0649
The information below is about IL_7RQB_041
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_43275.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
30

Unit IDs

6XZB|1|A2|G|1031
6XZB|1|A2|A|1032
6XZB|1|A2|U|1033
6XZB|1|A2|G|1034
*
6XZB|1|A2|C|1121
6XZB|1|A2|G|1122
6XZB|1|A2|C|1123

Current chains

Chain A2
23S rRNA

Nearby chains

Chain B2
5S ribosomal RNA; 5S rRNA
Chain M2
50S ribosomal protein L16
Chain e2
50S ribosomal protein L36

Coloring options:


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