IL_6XZB_101

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6XZB|1|A2|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_101 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.0649

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6XZB|1|A2|G|1031
6XZB|1|A2|A|1032
6XZB|1|A2|U|1033
6XZB|1|A2|G|1034
*
6XZB|1|A2|C|1121
6XZB|1|A2|G|1122
6XZB|1|A2|C|1123

Current chains

Chain A2

23S rRNA

Nearby chains

Chain B2

5S ribosomal RNA; 5S rRNA

Chain M2

50S ribosomal protein L16

Chain e2

50S ribosomal protein L36