IL_6XZB_107

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

6XZB|1|A2|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_107 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.0439

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

6XZB|1|A2|G|1202
6XZB|1|A2|U|1203
6XZB|1|A2|A|1204
6XZB|1|A2|A|1205
6XZB|1|A2|G|1206
*
6XZB|1|A2|U|1240
6XZB|1|A2|A|1241
6XZB|1|A2|U|1242
6XZB|1|A2|C|1243

Current chains

Chain A2

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain L2

50S ribosomal protein L15