IL_6XZB_109

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_109 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0492

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6XZB|1|A2|A|1262
6XZB|1|A2|U|1263
6XZB|1|A2|A|1264
6XZB|1|A2|A|1265
6XZB|1|A2|G|1266
6XZB|1|A2|U|1267
6XZB|1|A2|A|1268
6XZB|1|A2|A|1269
*
6XZB|1|A2|U|2011
6XZB|1|A2|G|2012
6XZB|1|A2|A|2013
6XZB|1|A2|A|2014
6XZB|1|A2|A|2015
6XZB|1|A2|U|2016
6XZB|1|A2|U|2017

Current chains

Chain A2

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain S2

50S ribosomal protein L22

Chain a2

50S ribosomal protein L32