3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
AUAAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZB_109 not in the Motif Atlas
Homologous match to IL_5J7L_289
Geometric discrepancy: 0.0492
The information below is about IL_5J7L_289
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6XZB|1|A2|A|1262
6XZB|1|A2|U|1263
6XZB|1|A2|A|1264
6XZB|1|A2|A|1265
6XZB|1|A2|G|1266
6XZB|1|A2|U|1267
6XZB|1|A2|A|1268
6XZB|1|A2|A|1269
*
6XZB|1|A2|U|2011
6XZB|1|A2|G|2012
6XZB|1|A2|A|2013
6XZB|1|A2|A|2014
6XZB|1|A2|A|2015
6XZB|1|A2|U|2016
6XZB|1|A2|U|2017

Current chains

Chain A2
23S rRNA

Nearby chains

Chain E2
50S ribosomal protein L4
Chain S2
50S ribosomal protein L22
Chain a2
50S ribosomal protein L32

Coloring options:


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