IL_6XZB_127

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

6XZB|1|A2|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6XZB_127 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.0503

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6XZB|1|A2|A|1669
6XZB|1|A2|C|1670
6XZB|1|A2|U|1671
6XZB|1|A2|A|1672
6XZB|1|A2|G|1673
6XZB|1|A2|G|1674
*
6XZB|1|A2|C|1990
6XZB|1|A2|U|1991
6XZB|1|A2|G|1992
6XZB|1|A2|U|1993

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain K2

50S ribosomal protein L14