3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
UAUGUAG*UGAAA
Length
12 nucleotides
Bulged bases
6XZB|1|A2|U|1714
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6XZB_129 not in the Motif Atlas
Homologous match to IL_5J7L_309
Geometric discrepancy: 0.1066
The information below is about IL_5J7L_309
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6XZB|1|A2|U|1712
6XZB|1|A2|A|1713
6XZB|1|A2|U|1714
6XZB|1|A2|G|1715
6XZB|1|A2|U|1716
6XZB|1|A2|A|1717
6XZB|1|A2|G|1718
*
6XZB|1|A2|U|1742
6XZB|1|A2|G|1743
6XZB|1|A2|A|1744
6XZB|1|A2|A|1745
6XZB|1|A2|A|1746

Current chains

Chain A2
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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